> PLPR0108 ..AC:X60205 ..OS:Zea mays ..GENE:c2 ..PROD:chalcone synthase ..[ -200:  +51] ..CDS:+238 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.14   G -  0.25   T -  0.13   C -  0.48

      1  ccgcccgccc gcccgcggcc acgcgaccca actaaccccg gcgcggcgtt
     51  cgttccagtg ggcgggtctc gatccccggc acgtccgccc cgcgcgtcgt
    101  cgccgcccac gtggcggccc atccgcccgt ccaactgacc taacccggtc
    151  gccagcccgc gcgctTATAT AAAcgccccc accggcttcc gtcctctccc
    201  ACCACAGCTC CCACACACAG CAGGCAGCAG CTCGATCGCT AGCTCCTCCG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00004   Mean Expected Number 0.002   -strand    -28 :  -33   TTTATA
AC RSP00048   Mean Expected Number 0.001   +strand    -95 :  -84   CCcACGTGGCGG
AC RSP00146   Mean Expected Number 0.000   +strand    -36 :  -30   TTATATA
AC RSP00146   Mean Expected Number 0.000   -strand    -29 :  -35   TTATATA
AC RSP00147   Mean Expected Number 0.002   +strand    -33 :  -28   TATAAA
AC RSP00175   Mean Expected Number 0.008   +strand    -93 :  -86   CACGTGGC
AC RSP00682   Mean Expected Number 0.008   -strand    -86 :  -95   GCCACGTGGg
AC RSP00718   Mean Expected Number 0.008   +strand    -94 :  -87   CCACGTGG
AC RSP00718   Mean Expected Number 0.008   -strand    -87 :  -94   CCACGTGG
AC RSP00808   Mean Expected Number 0.003   -strand   -165 : -171   GTTAGTT
AC RSP00960   Mean Expected Number 0.001   +strand   -172 : -165   CAACTAAC
AC RSP01185   Mean Expected Number 0.007   +strand   -173 : -162   CCAACTAACCCC

  Totally      12 motifs of    10 different REs have been found


Description of REs found

    4. Group RE: Motif g /AC: RSP00004//OS: Pisum sativum /GENE: PSPAL2/RE: Motif g /TF: unknown
   47. Group RE: ABRE A2; ABRE2 /AC: RSP00048//OS: Hordeum vulgare /GENE: HVA1 gene/RE: ABRE A2; ABRE2 /TF: unknown
  142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
  143. Group RE: TATA2 /AC: RSP00147//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA2 /TF: unknown
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC:  RSP01254
  761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC:  RSP00810  RSP00812  RSP00813
  885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB
 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown