> PLPR0109 ..AC:X53398 S45324 ..OS:Zea mays ..GENE:Cab-m7 ..PROD:light harvesting  chlorophyll a/b binding protein ..[ -200:  +51] ..CDS:+65 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.23   G -  0.18   T -  0.25   C -  0.34

      1  gcctcagcca cagcccacat ctgcctcatc gtctccctga ggctcccgtc
     51  gcgccacgtg ttccagcatc ccggacgcac caatggcatc caagcatcag
    101  atttattttt attttctggc aacattcaag atagaacttg atcgcggcgg
    151  tgtttcctcc gtcgcTTTAA ATAccttcgt cgcctccaca agtccacagc
    201  ATCTCAAGCC ACCATCGATC TTCAAGTCTC GCTACGTAGC AGTGCAATAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00002   Mean Expected Number 0.001   -strand   -140 : -148   ACACGTGGC
AC RSP00065   Mean Expected Number 0.001   -strand   -142 : -150   ACGTGGCGC
AC RSP00140   Mean Expected Number 0.000   +strand   -100 :  -88   AtTTATTTTTATT
AC RSP00175   Mean Expected Number 0.003   -strand   -141 : -148   CACGTGGC
AC RSP00204   Mean Expected Number 0.005   -strand   -139 : -148   aACACGTGGC
AC RSP00488   Mean Expected Number 0.004   -strand    +39 :  +30   CTACGTAGCg
AC RSP00819   Mean Expected Number 0.007   +strand   -148 : -139   GCCACGTgTT
AC RSP01255   Mean Expected Number 0.005   -strand   -140 : -147   ACACGTGG
AC RSP01301   Mean Expected Number 0.008   +strand    -36 :  -27   CTtTAAATAC

  Totally       9 motifs of     9 different REs have been found


Description of REs found

    2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
   64. Group TF: EmBP-1 /AC: RSP00065//OS: Triticum aestivum /GENE: Em/RE: Em1a /TF: EmBP-1
  136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown
  765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302