> PLPR0110 ..AC:X78988 ..OS:Zea mays ..GENE:MPI ..PROD:proteinase inhibitor ..[ -200: +51] ..CDS:+205 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.23 G - 0.20 T - 0.29 C - 0.27
1 tcagcgccac tacgcgcgct ggaaaatgct gactattttg gctgcaagca
51 tgggataacc atggattttt tttccctgca gtgttgctat ctgttctttg
101 tttcgtagtg gctgtttatc ctcgtgtgcc tcgcgtgcgt atatacacac
151 acgtcctgcc tgcacgcaac gcagctctat aaatacctca tcaccggtgc
201 ACTCGCTTAA TATATATCCA ACAACCAGCA GTGCAACAAG CAAGATTTAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00110 Mean Expected Number 0.004 +strand -53 : -46 CACACGTC
AC RSP01233 Mean Expected Number 0.008 +strand +39 : +45 AGCAAGA
AC RSP01296 Mean Expected Number 0.001 +strand -24 : -16 CTATAAATA
AC RSP01301 Mean Expected Number 0.009 +strand -24 : -15 CTATAAATAC
Totally 4 motifs of 4 different REs have been found
Description of REs found
108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown
1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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