> PLPR0112 ..AC:AJ292756 ..OS:Arabidopsis thaliana ..GENE:pyk10 ..PROD:ribosomal protein L9 ..[ -200: +51] ..TSS+3522 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.28 C - 0.14
1 acaacctata acgtcaatat ccatgtacgt agtaataatt aggatatgac
51 acgaacacac gatatcttga tatatacaaa atgaaaactt aaaaattgat
101 taatatggcc tggctgggta tattattaaa aaaacataaa gagagatcaa
151 taattgattc gaagatcacT ATATAAAgaa cgtcttcgat atgtaaaaga
201 AACCATCCTA AACATTTTTT CTTGAATAAA ATCAGAATTA CAAACAAAAA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00999 Mean Expected Number 0.006 +strand -35 : -25 TCACTATaTAA
AC RSP01060 Mean Expected Number 0.006 +strand -53 : -45 CAATAATTG
AC RSP01060 Mean Expected Number 0.006 -strand -45 : -53 CAATTATTG
AC RSP01077 Mean Expected Number 0.004 +strand -53 : -45 CAATAATTG
Totally 4 motifs of 3 different REs have been found
Description of REs found
920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3
980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4
995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short)
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