> PLPR0113 ..AC:X74067 ..OS:Craterostigma plantagineum ..GENE:CDeT6-19 ..PROD:dessication-related protein ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.34 C - 0.24
1 tgttcattgt cttgtttaag tcttatccta aatgtagttc tgccgacata
51 acatacataa gagcacgtgg ctttccctta ccctagatga atcaagtaat
101 gaaacgtgtc cataatctgt actatggtGC AATctttagc aatatcatcg
151 atcagctgag aaccttttcT ATATAAAcct cctcaatttt cctcccattt
201 CATCGACAAC ACATCTGATA ATTAGAGTCT ACTACTCACA TTCACTTGAT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00064 Mean Expected Number 0.002 +strand -139 : -130 AGcACGTGGC
AC RSP00175 Mean Expected Number 0.001 +strand -137 : -130 CACGTGGC
AC RSP00320 Mean Expected Number 0.002 +strand -58 : -48 tATCATCGATC
AC RSP00713 Mean Expected Number 0.007 +strand -48 : -42 CAGCTGA
AC RSP00713 Mean Expected Number 0.008 -strand -43 : -49 CAGCTGA
AC RSP00821 Mean Expected Number 0.001 -strand -130 : -139 GCCACGTgCT
AC RSP00913 Mean Expected Number 0.006 -strand +4 : -6 GATGAAATGG
AC RSP00914 Mean Expected Number 0.010 -strand +4 : -6 GATGAAATGG
AC RSP01010 Mean Expected Number 0.002 +strand -160 : -152 TGCCGACAT
AC RSP01034 Mean Expected Number 0.003 +strand -136 : -130 ACGTGGC
AC RSP01035 Mean Expected Number 0.008 +strand -97 : -91 ACGTGTC
AC RSP01104 Mean Expected Number 0.007 +strand -26 : -19 AAACCTCC
AC RSP01469 Mean Expected Number 0.007 -strand +18 : +9 TCAgATGTGT
Totally 13 motifs of 12 different REs have been found
Description of REs found
63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1
679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC
767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF
844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2
935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
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