> PLPR0116 ..AC:X56195 ..OS:Brassica napus ..GENE:Bp19 ..PROD:auxin-induced protein ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.27 C - 0.25
1 agctacacct cttgatcagg acaaagacat aatcaaatca tcttgtggtg
51 aataattttt aatctcaaat ccaatatttg attagagaag tttcagccat
101 tcaactacct aaaatgtctc cctccatgca aagctcatgc gaacctaatt
151 ttagaaacta caacttcTAT AAGAAtctcc cataatgcac cataatctcc
201 ACCAGCCCCC ATTAAATAAT CCACCGGGTC TGAATAAATA AAAATAAGTC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00078 Mean Expected Number 0.001 +strand -2 : +10 CCACCAgCCCCC
AC RSP00140 Mean Expected Number 0.002 -strand +49 : +37 AcTTATTTTTATT
AC RSP01642 Mean Expected Number 0.006 +strand -89 : -80 AAATGTCTCC
Totally 3 motifs of 3 different REs have been found
Description of REs found
77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown
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