> PLPR0118 ..AC:AF020542 ..OS:Malus domestica ..GENE:Ypr10 ..PROD:major allergen Mal d 1 ..[ -200:  +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.12   T -  0.28   C -  0.23

      1  caatgactac aatgaacaat gatgtgtgag aggtaaaaat gagtgtatat
     51  accgtcactt agatatatcc aatacacaag tgacacaaat tattaaacat
    101  tttaagatcc ttgtaaattt gtagagatcg aatgatcaaa atgacaaaat
    151  gccccaaact ctactccTAT AAATAccacc tctcagtacc catctccaac
    201  ACAAAACTCT CAACCTTCAC TAAAACCATC ATCCTTGGTA GTTGCTTTCT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00509   Mean Expected Number 0.003   +strand    -33 :  -22   TATAAATACCAc
AC RSP01000   Mean Expected Number 0.008   +strand    -52 :  -43   ATGCCCCAaA
AC RSP01296   Mean Expected Number 0.009   +strand    -34 :  -26   CTATAAATA
AC RSP01301   Mean Expected Number 0.002   +strand    -34 :  -25   CTATAAATAC
AC RSP01469   Mean Expected Number 0.009   -strand   -118 : -127   TCACtTGTGT
AC RSP01686   Mean Expected Number 0.009   -strand   -173 : -178   CACACA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302
 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown