> PLPR0121 ..AC:U14599 ..OS:Zea mays ..GENE:Bz2 ..PROD:unknown seed protein ..[ -200: +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.24 G - 0.27 T - 0.17 C - 0.32
1 caatgttatt accaacacgt gctgttctgc tctcgtgtaa tgtccagcta
51 caagcacgcg cgcgagccga atttggacgc accagaatca gttagctcgc
101 accaacccgc acgagcaccg accggTCAAT gacacgactc gccagtcgcc
151 actaccggtt cccgtttaaa ttgccggccg catcaagctg agggctgagg
201 CAGAGAGGTG CCAACAGAAG TCACGTCGAG ACCAGCCGGC CGGCCGGACT
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00179 Mean Expected Number 0.003 +strand -36 : -30 TTTAAAT
AC RSP00652 Mean Expected Number 0.006 -strand -43 : -50 CCGGTAGT
AC RSP00817 Mean Expected Number 0.003 +strand -187 : -178 aACACGTGCT
AC RSP00950 Mean Expected Number 0.006 +strand -103 : -93 CgCACCAACCC
AC RSP00978 Mean Expected Number 0.003 -strand -178 : -187 AgCACGTGTT
AC RSP01083 Mean Expected Number 0.001 +strand -104 : -93 TCgCACCAACCC
Totally 6 motifs of 6 different REs have been found
Description of REs found
173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
626. Group TF: C1 /AC: RSP00652//OS: Zea mays /GENE: a1/RE: C1 DBS /TF: C1
763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown
900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown
1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1
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