> PLPR0122 ..AC:U01377 ..OS:Arabidopsis thaliana ..GENE:cor15a ..PROD:unknown seed protein ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.34 C - 0.21
1 gtagccacaa tttcatggcc gacctgcttt ttttttcttc ttctttctga
51 aaaccacaaa tatgattaca cgtggcctga aaagaacgaa cagaaactcg
101 gtaatgtgca aaaaatatct tactcttaat acgtgtaatt ttggagtgta
151 ataggtctat cgatcTATAA AACgatacta ttggagatta gattcttctc
201 ATCTCACTTT GTTCATCTAA AAACTCCTCC TTTCATTTCC AAACAAAAAC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00002 Mean Expected Number 0.000 +strand -133 : -125 ACACGTGGC
AC RSP00153 Mean Expected Number 0.001 +strand -133 : -124 aCACGTGGCC
AC RSP00175 Mean Expected Number 0.001 +strand -132 : -125 CACGTGGC
AC RSP00204 Mean Expected Number 0.001 +strand -134 : -125 tACACGTGGC
AC RSP00405 Mean Expected Number 0.003 +strand -61 : -54 TTTGGAGT
AC RSP00463 Mean Expected Number 0.000 +strand -191 : -169 ATTTCATGGCCGACCTGCTTTTT
AC RSP00524 Mean Expected Number 0.007 +strand -133 : -127 ACACGTG
AC RSP00682 Mean Expected Number 0.001 -strand -125 : -134 GCCACGTGtA
AC RSP00783 Mean Expected Number 0.000 +strand -134 : -125 TACACGTGGC
AC RSP00887 Mean Expected Number 0.003 -strand -4 : -12 AAGAATCTA
AC RSP01034 Mean Expected Number 0.003 +strand -131 : -125 ACGTGGC
AC RSP01255 Mean Expected Number 0.001 +strand -133 : -126 ACACGTGG
AC RSP01288 Mean Expected Number 0.004 +strand -72 : -65 ATACGTGT
AC RSP01702 Mean Expected Number 0.007 -strand -64 : -73 tACACGTATT
AC RSP01718 Mean Expected Number 0.001 -strand -63 : -74 TTACACGTATtA
Totally 15 motifs of 15 different REs have been found
Description of REs found
2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
441. Group TF: CBF1 /AC: RSP00463//OS: Arabidopsis thaliana /GENE: COR15a/RE: C-repeat/DRE /TF: CBF1
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF
819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown
1526. Group TF: STF1/HY5 /AC: RSP01718//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: G/A-box (1) /TF: STF1/HY5
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