> PLPR0123 ..AC:J03919 ..OS:Glycine max ..GENE:Aux28 ..PROD:auxin-induction related protein ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.24 C - 0.22
1 ttatacgtcc ccttgtcctg cccctgcccc tataccatag aacattagta
51 cccccacaca cacccctcct ctatctttca ctattattgc cacacaaatc
101 aattaactga atgcttagag agagaaagag gagaaggagt agtgataagg
151 tgatcataga gcatattata agagagtgaa aactaatgga ggttggcctc
201 AAGAAGGAGA ACATGGGGTT TGAGGAAACT GAGTTAAGGC TTGGACTGCC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00621 Mean Expected Number 0.000 +strand -138 : -130 CCCCTCCTC
AC RSP00623 Mean Expected Number 0.000 +strand -118 : -77 aTtaTTGCCACACAAATCAATTAACTGAATGCTTAGAGAGAG
AC RSP00625 Mean Expected Number 0.000 +strand -54 : -12 AAGGTGATCATAGAGCATATTATAAGAGAGTGAAAACTAATGG
AC RSP00864 Mean Expected Number 0.002 +strand -84 : -76 AGAGAGAGA
Totally 4 motifs of 4 different REs have been found
Description of REs found
597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown
599. Group RE: A2 /AC: RSP00623//OS: Glycine max /GENE: GmAux28/RE: A2 /TF: unknown
601. Group RE: A1 /AC: RSP00625//OS: Glycine max /GENE: GmAux28/RE: A1 /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
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