> PLPR0125 ..AC:X13306 X06334 ..OS:Triticum aestivum ..GENE:LMW ..PROD:mature LMWG-1D1 glutenin ..[ -200: +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.42 G - 0.17 T - 0.22 C - 0.20
1 atcgtatgca caactaaaaa tcaactttga tgatcaatat atccaaaagt
51 acgcttgtag ctagtgcaaa cctaacccaa tgtaacaaaa taattcattt
101 cagatggagc caaacagaat tattaaagct gatgcaaaga aggaaaagag
151 gtggttcctg ggctacTATA AATAggcatg aagtataaag atcatcacaa
201 GCACAAGCAT CAGAACCAAG CAACACTAGT TAACACCAAT CCACCATGAA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00055 Mean Expected Number 0.006 +strand -85 : -74 AGAATTATTAAA
AC RSP00792 Mean Expected Number 0.001 +strand +16 : +25 CCAAGCAACA
AC RSP00857 Mean Expected Number 0.003 -strand -94 : -103 CCATCTGAAa
AC RSP01296 Mean Expected Number 0.006 +strand -35 : -27 CTATAAATA
Totally 4 motifs of 4 different REs have been found
Description of REs found
54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645
745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
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