> PLPR0126 ..AC:AY052152 ..OS:Triticum aestivum ..GENE:HMW glutenin ..PROD:HMW glutenin ..[ -200: +51] ..CDS:+63 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.28 G - 0.11 T - 0.30 C - 0.31
1 cgtccaaaaa tctgttttgc aaagctccaa ttgctcctag cttatccagc
51 ttcttttgtg ttggcaaatt gttcttttcc aaccgacttt attcttttca
101 catttcttct taggctgaac taaccttcgt cgtgcacaca accATTGTcc
151 tgaaccttca ccacgtcccT ATAAAAGccc aaccaatctc cacaatttca
201 TCATCACCCC ACAACACCGA GCACCACAAA ATAGAGATCA ATTCACTGAC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00115 Mean Expected Number 0.003 +strand +31 : +41 ATAGAgATCAA
AC RSP00129 Mean Expected Number 0.009 -strand -67 : -72 CACGAC
AC RSP00301 Mean Expected Number 0.006 +strand -183 : -177 TGCAAAG
AC RSP00850 Mean Expected Number 0.009 -strand -136 : -141 GCCAAC
AC RSP01080 Mean Expected Number 0.001 +strand -82 : -71 ACTaACCTTCGT
Totally 5 motifs of 5 different REs have been found
Description of REs found
113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1
127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown
289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882
790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown
998. Group TF: DcMYB1 /AC: RSP01080//OS: Daucus carota /GENE: DcPAL1/RE: box-L2 /TF: DcMYB1
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