> PLPR0127 ..AC:X06441 ..OS:Glycine max ..GENE:lbc3 ..PROD:leghaemoglobin ..[ -200: +51] ..TSS:201 (+1) # Alternative TSS(s): -12 -9 -7 -5 -3 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.34 C - 0.14
1 aattcagaat aatacttaaa ttatttattt actgaaaatg agttgattta
51 agtttttgaa aagatgattg tctcttcacc ataccaattg atcaccctcc
101 tccaacaagc caagagagac ataagtttta ttagttattc tgatcactct
151 tcaagccttc taTATAAATA agtattggat gtgaagttgt tgcataactt
201 GCATTGAACA ATTAATAGAA ATAACAGAAA AGTAGAAAAG AAATATGttt
251 a
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00170 Mean Expected Number 0.000 +strand -186 : -171 CTTAAATTATTTATTT
AC RSP00381 Mean Expected Number 0.000 +strand -149 : -119 GTTTTTGAAAAGATGATTGTCTCTTCACCAT
AC RSP00574 Mean Expected Number 0.008 -strand -59 : -66 CAGAATAA
AC RSP01640 Mean Expected Number 0.005 -strand -77 : -86 tTATGTCTCT
Totally 4 motifs of 4 different REs have been found
Description of REs found
164. Group RE: Element 2 /AC: RSP00170//OS: Glycine max /GENE: lbc3/RE: Element 2 /TF: unknown
366. Group RE: OSE /AC: RSP00381//OS: Glycine max /GENE: lbc3/RE: OSE /TF: unknown
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown
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