> PLPR0130 ..AC:AJ001725 ..OS:Betula pendula ..GENE:NR ..PROD:nitrate-reductase ..[ -200:  +51] ..CDS:+115 ..TSS+1536 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.32   G -  0.18   T -  0.30   C -  0.20

      1  ggttcagaca taagtgaaag cttgaccgca acaaaatttg tttatataat
     51  aaatttaaaa acacaaaact tggttttact aaaaattaga tgaagagcgg
    101  tagatatata cttagatggg actatgacgt aatcgtATTG Tctttgacac
    151  gtctcctccc ccacgaggcc TATATATAta tctccgttaa cgcccctctt
    201  TTATTGCGCA GTGCATCTCA CTCAGAAAGT GATAGCGCCT GTAAAGGGTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00112   Mean Expected Number 0.005   +strand    -76 :  -69   TGACGTAA
AC RSP00153   Mean Expected Number 0.002   +strand    -40 :  -31   CCACGaGGCC
AC RSP00232   Mean Expected Number 0.008   -strand    -71 :  -80   ACGTCATAGt
AC RSP00727   Mean Expected Number 0.009   +strand   -181 : -175   GCTTGAC
AC RSP01035   Mean Expected Number 0.010   -strand    -49 :  -55   ACGTGTC
AC RSP01237   Mean Expected Number 0.008   +strand    -31 :  -22   CTaTATATAT
AC RSP01601   Mean Expected Number 0.008   -strand   -182 : -189   TTTCACTT
AC RSP01661   Mean Expected Number 0.000   +strand    -78 :  -67   TATGACGTaATC

  Totally       8 motifs of     8 different REs have been found


Description of REs found

  110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1
  690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
 1479. Group TF: HY5 /AC: RSP01661//OS: Arabidopsis thaliana /GENE: CKX5/6 (At1g75450)/RE: C/G-box /TF: HY5