> PLPR0132 ..AC:X03820 ..OS:Petunia hybrida ..GENE:rbcS (ssu8) ..PROD:ribulose 1,5-bisphosphate carboxylase ..[ -200:  +51] ..CDS:+55 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.36   G -  0.20   T -  0.31   C -  0.13

      1  cataatgaag agggtcttag ctccaaaaat acatttccaa cctttcatgt
     51  gtggatatta aatttgtaat atcaagaacc acataatcca atggttagct
    101  ttactccaag atgaggttag ttgatttttg tccgttagat atgtgaaata
    151  tgtaaaaacc ttatcatTAT ATAAAgggtg tggtgggcaa tacaaaagtc
    201  AGTGTGAAGT GTTTAAAGGA AAAAGCTTTG GAAGAAGCAA AAATCTTCTA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00235   Mean Expected Number 0.001   +strand   -118 : -107   aTAATCCAATGG
AC RSP00242   Mean Expected Number 0.000   +strand   -116 : -104   AATCCAATGGTTA
AC RSP00548   Mean Expected Number 0.001   -strand   -103 : -113   cTAACCATTGG
AC RSP00550   Mean Expected Number 0.002   -strand   -111 : -121   TGGATTATGTG
AC RSP00578   Mean Expected Number 0.000   +strand    -46 :  -25   AAAACCTTATCATTATATAAAG
AC RSP00579   Mean Expected Number 0.000   -strand    -31 :  -47   ATAATGATAAGGTTTTt
AC RSP00581   Mean Expected Number 0.000   +strand    -42 :  -28   CCTTATCATTATATA
AC RSP00627   Mean Expected Number 0.001   -strand    -34 :  -42   ATGATAAGG
AC RSP00881   Mean Expected Number 0.005   +strand   -130 : -121   ATCAAgAACC
AC RSP00960   Mean Expected Number 0.006   -strand    -78 :  -85   CAACTAAC
AC RSP01015   Mean Expected Number 0.005   -strand   -150 : -159   CAcATGAAAG

  Totally      11 motifs of    11 different REs have been found


Description of REs found

  228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS
  235. Group TF: LFU /AC: RSP00242//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: AG1 /TF: LFU
  524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown
  526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown
  554. Group RE: LRE-TATA M1 /AC: RSP00578//OS: Lycopersicon esculentum /GENE: rbcS1/RE: LRE-TATA M1 /TF: unknown
  555. Group RE: LRE-TATA M2 /AC: RSP00579//OS: Lycopersicon esculentum /GENE: rbcS1/RE: LRE-TATA M2 /TF: unknown
  557. Group RE: LRE-TATA LL1 /AC: RSP00581//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: LRE-TATA LL1 /TF: unknown
  603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1
  817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family
  885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB
  940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF