> PLPR0133 ..AC:X03821 ..OS:Petunia hybrida ..GENE:rbcS (ssu11A) ..PROD:ribulose 1,5-bisphosphate carboxylase ..[ -200:  +51] ..CDS:+67 ..TSS:201 (+1) # Alternative TSS(s):   -2 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.34   G -  0.19   T -  0.30   C -  0.18

      1  gagcttccgc cacgtggcac tatttttatg actaatatct ttttcctaac
     51  cttcatgtgg ccattaattt agtaatgtca agaacacata atccaatggt
    101  tACAATtcat ccaagatgag gcttgtttac ttgtatccgt tagatgtaga
    151  ggttatgtga aagcttaaca tTATATATAg aagggggcac tatacatcaa
    201  TAACCCTCTT GAAGCAAAGG TGGGAAAGGG AAACACAAAA ATATAAGCTA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00063   Mean Expected Number 0.001   +strand   -192 : -183   GCCaCGTGGC
AC RSP00063   Mean Expected Number 0.001   -strand   -183 : -192   GCCaCGTGGC
AC RSP00073   Mean Expected Number 0.001   +strand   -192 : -183   GCCACGTGGC
AC RSP00073   Mean Expected Number 0.001   -strand   -183 : -192   GCCACGTGGC
AC RSP00153   Mean Expected Number 0.001   +strand   -191 : -182   CCACGTGGCa
AC RSP00153   Mean Expected Number 0.001   -strand   -184 : -193   CCACGTGGCg
AC RSP00175   Mean Expected Number 0.001   +strand   -190 : -183   CACGTGGC
AC RSP00175   Mean Expected Number 0.001   -strand   -185 : -192   CACGTGGC
AC RSP00204   Mean Expected Number 0.001   +strand   -192 : -183   GcCACGTGGC
AC RSP00204   Mean Expected Number 0.001   -strand   -183 : -192   GcCACGTGGC
AC RSP00235   Mean Expected Number 0.001   +strand   -113 : -102   aTAATCCAATGG
AC RSP00242   Mean Expected Number 0.000   +strand   -111 :  -99   AATCCAATGGTTA
AC RSP00313   Mean Expected Number 0.001   +strand   -190 : -180   CACgTGGCACT
AC RSP00548   Mean Expected Number 0.002   -strand    -98 : -108   GTAACCATTGG
AC RSP00550   Mean Expected Number 0.003   -strand   -106 : -116   TGGATTATGTG
AC RSP00682   Mean Expected Number 0.001   +strand   -192 : -183   GCCACGTGGc
AC RSP00682   Mean Expected Number 0.001   -strand   -183 : -192   GCCACGTGGc
AC RSP00718   Mean Expected Number 0.001   +strand   -191 : -184   CCACGTGG
AC RSP00718   Mean Expected Number 0.001   -strand   -184 : -191   CCACGTGG
AC RSP00881   Mean Expected Number 0.010   +strand     -5 :   +5   ATCAAtAACC
AC RSP01034   Mean Expected Number 0.005   +strand   -189 : -183   ACGTGGC
AC RSP01034   Mean Expected Number 0.005   -strand   -186 : -192   ACGTGGC
AC RSP01215   Mean Expected Number 0.001   +strand   -151 : -141   CCTTCATGTGG
AC RSP01591   Mean Expected Number 0.000   +strand   -192 : -180   gCCACGTGGCACT

  Totally      24 motifs of    16 different REs have been found


Description of REs found

   62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS
  235. Group TF: LFU /AC: RSP00242//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: AG1 /TF: LFU
  299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1)
  524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown
  526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC:  RSP01254
  817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs
 1414. Group TF: GBF /AC: RSP01591//OS: Glycine max /GENE: SRS-4/RE: G box /TF: GBF