> PLPR0136 ..AC:X03103 ..OS:Hordeum vulgare ..GENE:B1 hordein ..PROD:mature B1 hordein (aa 1-274) ..[ -200: +51] ..CDS:+53 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.24 C - 0.21
1 tatactttgt gtatgatcat atgcacaact aaaaagcaac tttgatgatc
51 aatccaaaag tacgtttgta gcttgtgcaa cctaacacaa tgtaccaaaa
101 atccatttcc aaacatccaa acACAATtgt taaatttgat gcaaagaagg
151 aaagagatga agccatggct acTATAAATA ggcatgtagt atagagatca
201 TCACAAGCAC AAGTATCAAA ACCAAGCAAC ACTCGTTAAC ACCAATCCAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00792 Mean Expected Number 0.001 +strand +22 : +31 CCAAGCAACA
AC RSP01071 Mean Expected Number 0.002 -strand -133 : -142 CAAACGTACt
AC RSP01296 Mean Expected Number 0.008 +strand -29 : -21 CTATAAATA
Totally 3 motifs of 3 different REs have been found
Description of REs found
745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
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