> PLPR0138 ..AC:X04334 ..OS:Pisum sativum ..GENE:rbcS-3C ..PROD:ribulose 1.5-bisphosphate carboxylase (RBC) ..[ -200:  +51] ..CDS: +8 ..TSS:201 (+1) # Alternative TSS(s):   -6   -4   -2 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.30   G -  0.16   T -  0.33   C -  0.22

      1  gataaggtca tcatccacgt ggcactctca tagtgatgca taatgtatgg
     51  ctagtataca attttctttt caaactcgtg tggttaatat ggttccattg
    101  atgatcattt tcACAATcca aaaccattgg tatacttgat cagaaaccat
    151  ttctgaaaca tTATATATAc ctatagaagc tttgcaacct aattataaca
    201  ACAATGGCTT CTATGATATC CTCTTCCGCT GTGACAACAG TCAGCCGTGC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00073   Mean Expected Number 0.001   +strand   -187 : -178   tCCACGTGGC
AC RSP00073   Mean Expected Number 0.001   -strand   -178 : -187   GCCACGTGGa
AC RSP00153   Mean Expected Number 0.002   +strand   -186 : -177   CCACGTGGCa
AC RSP00175   Mean Expected Number 0.001   +strand   -185 : -178   CACGTGGC
AC RSP00189   Mean Expected Number 0.003   +strand   -187 : -178   TCCACGTgGC
AC RSP00205   Mean Expected Number 0.000   +strand   -123 : -110   GTGTGGTTAATATG
AC RSP00228   Mean Expected Number 0.003   +strand    -97 :  -86   ATCATTTTCACa
AC RSP00313   Mean Expected Number 0.001   +strand   -185 : -175   CACgTGGCACT
AC RSP00333   Mean Expected Number 0.001   -strand   -151 : -159   CCATACATT
AC RSP00340   Mean Expected Number 0.005   +strand   -187 : -178   TCCACGTGgC
AC RSP00682   Mean Expected Number 0.002   -strand   -178 : -187   GCCACGTGGA
AC RSP00683   Mean Expected Number 0.005   -strand   -178 : -187   GCCAcGTGGA
AC RSP00718   Mean Expected Number 0.001   +strand   -186 : -179   CCACGTGG
AC RSP00718   Mean Expected Number 0.001   -strand   -179 : -186   CCACGTGG
AC RSP00784   Mean Expected Number 0.000   +strand   -187 : -178   TCCACGTGGC
AC RSP00938   Mean Expected Number 0.000   -strand   -177 : -188   TGCCACGTGGAt
AC RSP00942   Mean Expected Number 0.000   +strand   -123 : -109   GTGTGGTTAATATGG
AC RSP01034   Mean Expected Number 0.004   +strand   -184 : -178   ACGTGGC
AC RSP01333   Mean Expected Number 0.000   +strand   -124 : -110   cGTGTGGTTAATATG
AC RSP01591   Mean Expected Number 0.000   +strand   -187 : -175   TCCACGTGGCACT
AC RSP01726   Mean Expected Number 0.000   -strand   -177 : -188   TGCCACGTGGaT

  Totally      21 motifs of    19 different REs have been found


Description of REs found

   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
  198. Group TF: GT-1 /AC: RSP00205//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II /TF: GT-1
  221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1
  299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1)
  319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
  683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC:  RSP01254
  739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF
  867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF
  871. Group TF: GBF /AC: RSP00942//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II /TF: GBF ||Identical REs AC:  RSP01595
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
 1218. Group TF: BGTF /AC: RSP01333//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Box II, wild) /TF: BGTF
 1414. Group TF: GBF /AC: RSP01591//OS: Glycine max /GENE: SRS-4/RE: G box /TF: GBF
 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5