> PLPR0139 ..AC:X02382 ..OS:Zea mays ..GENE:sucrose synthase,EC 2.4.1.13 ..PROD:sucrose synthase ..[ -200: +51] ..TSS+1142 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.19 G - 0.22 T - 0.27 C - 0.32
1 attgagtgcg ccatcaggat ttggaaattc tggttttgag taatactgta
51 atttggcatt atccattgcc gagtttccaa gctccgtcag cttgaacgtg
101 gacccctacc atctgcacca gctcggcacc tcacgctcgc agcgcatgga
151 gcctaggagc agctgcccgt ctatttattg gtccctctcc cgtcccagag
201 AAACCCTCCC TCCCTCCTCC ATTGGACTGC TTGCTCCCTG TTGACCATTG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00857 Mean Expected Number 0.009 +strand -92 : -83 CCATCTGcAC
AC RSP01174 Mean Expected Number 0.000 +strand -17 : -7 CCTCTCCCGTC
AC RSP01175 Mean Expected Number 0.004 +strand -40 : -30 AGCTGCCCGTC
AC RSP01176 Mean Expected Number 0.001 -strand -37 : -47 AGCTGCTCCTA
AC RSP01734 Mean Expected Number 0.008 -strand -99 : -105 TCCACGT
Totally 5 motifs of 5 different REs have been found
Description of REs found
793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown
1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a
1086. Group TF: Zmhox1a /AC: RSP01175//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 2 /TF: Zmhox1a
1087. Group TF: Zmhox1a /AC: RSP01176//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 3 /TF: Zmhox1a
1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3
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