> PLPR0140 ..AC:X02408 ..OS:Phaseolus vulgaris ..GENE:dlec1 ..PROD:erythroagglutinating phytohemagglutinin ..[ -200: +51] ..TSS:201 (+1) # Alternative TSS(s): -8 -6 -4 -2 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.37 C - 0.16
1 taaatttaaa ctaattattt catatttttt caatgtattt gatgacgtgt
51 atgcattgcc atcgttgctt aattgttatt tctatattct tattactccc
101 tcaaataata ttataaaaga aaaaagaatc cataaagtag agagagagag
151 tgcagttgtt gttgTATAAA TAgagaagag agtgatggtt aatgcatgaa
201 TGCATACATG GCTTCCTCCA ACTTACTCTC CCTAGCCCTC TTCCTTGTGC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00710 Mean Expected Number 0.004 +strand -189 : -177 TAATTATTTCaTA
AC RSP00864 Mean Expected Number 0.000 +strand -62 : -54 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.000 +strand -60 : -52 AGAGAGAGA
AC RSP00916 Mean Expected Number 0.002 +strand -160 : -151 GATGACGTGT
AC RSP00997 Mean Expected Number 0.003 +strand -160 : -151 GATGACGTGT
AC RSP01258 Mean Expected Number 0.002 +strand -158 : -151 TGACGTGT
AC RSP01275 Mean Expected Number 0.002 -strand -150 : -159 TaCACGTCAT
AC RSP01654 Mean Expected Number 0.005 +strand -160 : -151 GATGACGTGT
Totally 8 motifs of 7 different REs have been found
Description of REs found
676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2)
1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1
1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown
1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5
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