> PLPR0144 ..AC:X02983 ..OS:Pisum sativum ..GENE:legB ..PROD:legumin ..[ -200: +51] ..CDS:+36 ..TSS+1359 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.31 C - 0.28
1 caagtatgct ctttgtctgg taatggagat gatgaagcca ttagccacct
51 cctctatcag acataggtgt aaagcattat gcttccatag ccatgcaagc
101 tgcagaatgt CCAATtctca acatcccact ttcaatgacg tgtccaacct
151 tcaccaccct ctcttctcTA TAAATTacca cttctcatta aggttctccg
201 CATCACAACC AACATTCTCT TAGTATCTCT CTTCATGGCT AAGCTTTTGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00132 Mean Expected Number 0.005 +strand -157 : -150 GCCACCTC
AC RSP00232 Mean Expected Number 0.008 -strand -60 : -69 ACGTCATtGA
AC RSP00394 Mean Expected Number 0.009 +strand -133 : -127 TGTAAAG
AC RSP00460 Mean Expected Number 0.004 -strand -57 : -66 GACAcGTCAT
AC RSP01172 Mean Expected Number 0.000 +strand -117 : -92 TCCATAGCCATGCAAGCTGCAGAATG
AC RSP01258 Mean Expected Number 0.002 +strand -65 : -58 TGACGTGT
AC RSP01654 Mean Expected Number 0.004 +strand -67 : -58 AATGACGTGT
Totally 7 motifs of 7 different REs have been found
Description of REs found
130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2
225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1
377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402
438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2
1083. Group RE: CATGCATG-like motif /AC: RSP01172//OS: Pisum sativum /GENE: PsLegA/RE: CATGCATG-like motif /TF: unknown
1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1
1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5
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