> PLPR0146 ..AC:X04049 X00581 ..OS:Zea mays ..GENE:Adh1-1S ..PROD:alcohol dehydrogenase 1 ..[ -200:  +51] ..CDS:+100 ..TSS+1104 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.18   G -  0.23   T -  0.25   C -  0.33

      1  cgagcgaaaa ccacgtccac ggaccacggc tatgttccac tccaggtgga
     51  gctgcagccc cggtttcgca agccgcgcac gtggtttgct tgcccacagg
    101  cggccaaacc gcaccctcct tcccgtcgtt tcccatctct tcctccttta
    151  gagctaccac TATATAAAtc agggctcatt ttctcgctcc tcacaggctc
    201  ATCTCGCTTT GGATCGATTG GTTTCGTAAC TGGTGAAGGA CTGAGGGTCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00146   Mean Expected Number 0.004   -strand    -34 :  -40   TTATATA
AC RSP00653   Mean Expected Number 0.007   +strand    -20 :  -10   TTCTCgCTCCT
AC RSP00695   Mean Expected Number 0.004   +strand    -38 :  -32   TATAAAT
AC RSP00878   Mean Expected Number 0.004   +strand   -159 : -152   CCAGGTGG
AC RSP01137   Mean Expected Number 0.001   -strand    -98 : -109   CCGCCTGTGGGC
AC RSP01138   Mean Expected Number 0.000   -strand   -184 : -195   GACGTGGTTTTC
AC RSP01139   Mean Expected Number 0.001   +strand   -122 : -114   ACGTGGTTT
AC RSP01139   Mean Expected Number 0.001   -strand   -185 : -193   ACGTGGTTT
AC RSP01140   Mean Expected Number 0.000   +strand   -144 : -129   GCCCCGGTTTCGCAAG
AC RSP01141   Mean Expected Number 0.000   +strand   -144 : -114   GCCCCGGTTTCGCAAGCCGCGCACGTGGTTT
AC RSP01190   Mean Expected Number 0.009   +strand   -184 : -175   CCACGGACCA
AC RSP01191   Mean Expected Number 0.005   +strand   -107 : -100   CCACAGGC

  Totally      12 motifs of    11 different REs have been found


Description of REs found

  142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  661. Group RE: TATA box /AC: RSP00695//OS: Oryza sativa /GENE: Gt1/RE: TATA box /TF: unknown
  814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1
 1055. Group RE: Region A /AC: RSP01137//OS: Zea mays /GENE: Adh1/RE: Region A /TF: unknown
 1056. Group RE: Region C /AC: RSP01138//OS: Zea mays /GENE: Adh1/RE: Region C /TF: unknown
 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown
 1058. Group RE: Region B2 /AC: RSP01140//OS: Zea mays /GENE: Adh1/RE: Region B2 /TF: unknown
 1059. Group RE: Region B /AC: RSP01141//OS: Zea mays /GENE: Adh1/RE: Region B /TF: unknown
 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor
 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor