> PLPR0150 ..AC:X55937 ..OS:Brassica napus ..GENE:rbcSF1 ..PROD:ribulose bisphosphate carboxylase ..[ -200:  +51] ..CDS:+33 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.32   G -  0.21   T -  0.29   C -  0.18

      1  atgcaagata agataatagc atttctgcca cgtggcctta acatagtggt
     51  cagtatcgat aagggtctca acacctttct ttaatcatgt ggcagttaac
    101  gacgttatca tgaaatctgg accctctggt tattagggcc ttttcctctt
    151  gcggttctcg tTATATATAg ataaccaaag cgatagacaa acaagtaagt
    201  TAAGAGAAAA GAAGAAGAAG AAGAAGTAGT AATGGCTTCC TCTATGCTTT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00063   Mean Expected Number 0.001   +strand   -174 : -165   GCCaCGTGGC
AC RSP00063   Mean Expected Number 0.001   -strand   -165 : -174   GCCaCGTGGC
AC RSP00073   Mean Expected Number 0.002   +strand   -174 : -165   GCCACGTGGC
AC RSP00073   Mean Expected Number 0.002   -strand   -165 : -174   GCCACGTGGC
AC RSP00153   Mean Expected Number 0.002   +strand   -173 : -164   CCACGTGGCC
AC RSP00153   Mean Expected Number 0.002   -strand   -166 : -175   CCACGTGGCa
AC RSP00175   Mean Expected Number 0.001   +strand   -172 : -165   CACGTGGC
AC RSP00175   Mean Expected Number 0.001   -strand   -167 : -174   CACGTGGC
AC RSP00204   Mean Expected Number 0.002   +strand   -174 : -165   GcCACGTGGC
AC RSP00204   Mean Expected Number 0.002   -strand   -165 : -174   GcCACGTGGC
AC RSP00227   Mean Expected Number 0.003   +strand   -196 : -188   AAGATAAGA
AC RSP00478   Mean Expected Number 0.000   +strand   -175 : -150   TGCCACGTGGCCTTAACATAGTGGTC
AC RSP00682   Mean Expected Number 0.002   +strand   -174 : -165   GCCACGTGGc
AC RSP00682   Mean Expected Number 0.002   -strand   -165 : -174   GCCACGTGGc
AC RSP00718   Mean Expected Number 0.001   +strand   -173 : -166   CCACGTGG
AC RSP00718   Mean Expected Number 0.001   -strand   -166 : -173   CCACGTGG
AC RSP00724   Mean Expected Number 0.000   +strand   -194 : -165   GATAAGA-- ** bp --CACGTGGC
AC RSP01034   Mean Expected Number 0.007   +strand   -171 : -165   ACGTGGC
AC RSP01034   Mean Expected Number 0.006   -strand   -168 : -174   ACGTGGC
AC RSP01053   Mean Expected Number 0.003   +strand   -194 : -186   GATAAGATA
AC RSP01237   Mean Expected Number 0.009   -strand    -29 :  -38   aTCTATATAT

  Totally      21 motifs of    13 different REs have been found


Description of REs found

   62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1
  456. Group RE: G-box /AC: RSP00478//OS: Hordeum vulgare; Brassica napus /GENE: rbcSF1/RE: G-box /TF: unknown
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC:  RSP01254
  688. Group TF: HY5 /AC: RSP00724//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I/G-box /TF: HY5
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
  973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1
 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown