> PLPR0153 ..AC:M63642 ..OS:Lycopersicon esculentum ..GENE:HMG2 ..PROD:3-hydroxy-3-methylglutaryl coenzyme A reductase ..[ -200: +51] ..CDS:+112 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.31 C - 0.23
1 taatagccca gttcgtatcc aaatatttta cacttgacca gtcaacttga
51 ctatataaaa ctttacttca aaaaattaaa aaaaaaagaa agtatattat
101 tgtaaaagat aatactccat tcaaaatata aaatgaaaaa agtccagcgc
151 ggcaaccggg ttcctcTATA AATAcatttc ctacatcttc tcttctcctc
201 ACATCCCATC ACTCTTCTTT TAACAATTAT ACTTGTCAAT CATCAATCCC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00029 Mean Expected Number 0.003 +strand -100 : -93 TGTAAAAG
AC RSP00483 Mean Expected Number 0.006 -strand -48 : -52 GCCGC
AC RSP00750 Mean Expected Number 0.003 +strand -104 : -93 TTATTGTAAAAg
AC RSP01301 Mean Expected Number 0.003 +strand -35 : -26 CTATAAATAC
Totally 4 motifs of 4 different REs have been found
Description of REs found
28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown
460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown
712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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