> PLPR0154 ..AC:X16437 ..OS:Sinapis alba ..GENE:CHS1 ..PROD:chalcone synthase ..[ -200: +51] ..CDS:+49 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.29 C - 0.25
1 aagtaacgaa ataaaaggga agcaagaagg agaaccacat aaaagggagc
51 taactcctat aacacgttgt gcttcatctg cccgtccatc aaacctacca
101 cactctcttc tctttttctc ctttgtcatc ttgttatata atatctcact
151 cccccacctt gctttctaaa TATACATAca tatacttgcc tattacgcaa
201 AGTCACACAT CGATCAAAAT CTCTAGTTAA AACCAAGTTG GTTTAATATG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00014 Mean Expected Number 0.003 +strand -112 : -102 TCaAACCTACC
AC RSP00823 Mean Expected Number 0.000 +strand -120 : -93 CCCGTCCATCaAACCTACCACACTCTCt
AC RSP00830 Mean Expected Number 0.000 +strand -129 : -118 CTTCATCTGCCC
AC RSP01175 Mean Expected Number 0.001 +strand -125 : -115 AtCTGCCCGTC
Totally 4 motifs of 4 different REs have been found
Description of REs found
13. Group RE: MRE-core /AC: RSP00014//OS: Arabidopsis thaliana /GENE: CHS/RE: MRE-core /TF: unknown
769. Group TF: R2R3-type MYB /AC: RSP00823//OS: Arabidopsis thaliana /GENE: CHS/RE: MRE (AtCHS) /TF: R2R3-type MYB
776. Group TF: BHLH factors R, C1, Sn /AC: RSP00830//OS: Arabidopsis thaliana /GENE: CHS/RE: RRE (AtCHS) /TF: BHLH factors R, C1, Sn
1086. Group TF: Zmhox1a /AC: RSP01175//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 2 /TF: Zmhox1a
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