> PLPR0155 ..AC:Y00687 ..OS:Oryza sativa ..GENE:type II glutelin ..PROD:type II glutelin ..[ -200: +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.30 C - 0.24
1 gaaagagaga aagaacaaca caatgctgcg tcaattatac atatctgtat
51 gtccatcatt attcatccac ctttcgtgta ccacacttca tatatcataa
101 gagtcacttc acgtctggac attaacaaac tctatcttaa catttagatg
151 caagagcctt tatctcacTA TAAATGcacg atgatttctc attgtttctc
201 ACAAAAAGCA TTCAGTTCAT TAGTCCTACA ACAACATGGC ATCCATAAAT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00192 Mean Expected Number 0.004 +strand -78 : -67 TAACAAACTCTA
AC RSP00195 Mean Expected Number 0.001 +strand -128 : -118 TtCGTGTACCA
AC RSP00642 Mean Expected Number 0.009 +strand -30 : -23 TAAATGCA
AC RSP00691 Mean Expected Number 0.000 +strand -130 : -116 CTTTCGTGTACCACA
AC RSP00692 Mean Expected Number 0.000 +strand -181 : -164 ACAATGCTGCGTCAATTA
AC RSP00694 Mean Expected Number 0.001 +strand -77 : -65 AACAAACTCTATC
AC RSP01017 Mean Expected Number 0.005 -strand -2 : -9 AGAAACAA
Totally 7 motifs of 7 different REs have been found
Description of REs found
185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown
188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown
617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
657. Group RE: Box II /AC: RSP00691//OS: Oryza sativa /GENE: Gt1/RE: Box II /TF: unknown
658. Group RE: Box III /AC: RSP00692//OS: Oryza sativa /GENE: Gt1/RE: Box III /TF: unknown
660. Group RE: AACAA motif /AC: RSP00694//OS: Oryza sativa /GENE: Gt1/RE: AACAA motif /TF: unknown ||Identical REs AC: RSP01062
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
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