> PLPR0156 ..AC:AJ010729 ..OS:Avena fatua ..GENE:alpha-Amy2D ..PROD:alpha-amylase ..[ -200:  +51] ..CDS:+59 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.26   G -  0.19   T -  0.22   C -  0.33

      1  tccgtgccac cccagattga cttgaccgtc atcgattacc cctttttccc
     51  atgataacag acagagtccg gtacccgcgc attgcctcca agcaacactc
    101  cctatcgatc ccacgcacgc catggtatgt acggcgtagc tcgctcgcgt
    151  atgatcacac cccctcccTA TAAATAccag gcacctagta cacttgtaac
    201  CATCAGCCAA TCAATCATTC GGAGAGGAAG AAGAACCAGA TAGCTTGAGC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00034   Mean Expected Number 0.000   +strand   -146 : -104   TAACAGA-- ** bp --CCAAGCAACA
AC RSP00509   Mean Expected Number 0.001   +strand    -32 :  -21   TATAAATACCAG
AC RSP00514   Mean Expected Number 0.000   +strand   -183 : -169   TGACTTGACCGTCAT
AC RSP00679   Mean Expected Number 0.000   +strand   -182 : -168   GACTTGACCgTCATC
AC RSP00792   Mean Expected Number 0.001   +strand   -113 : -104   CCAAGCAACA
AC RSP01293   Mean Expected Number 0.000   +strand   -187 : -169   AGATTGACTTGACCGTCAT
AC RSP01296   Mean Expected Number 0.001   +strand    -33 :  -25   CTATAAATA
AC RSP01298   Mean Expected Number 0.000   +strand   -187 : -169   aGATTGACTTGACCGTCAT
AC RSP01301   Mean Expected Number 0.000   +strand    -33 :  -24   CTATAAATAC

  Totally       9 motifs of     9 different REs have been found


Description of REs found

   33. Group RE: GARE-DAE /Group TF: GAMyb /AC: RSP00034//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE-DAE /TF: GAMyb ||Identical REs AC:  RSP00485  RSP00658  RSP00844  RSP00846  RSP00848  RSP00851
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
  648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
  745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
 1190. Group RE: Box 2 /AC: RSP01293//OS: Avena fatua /GENE: Amy2/D/RE: Box 2 /TF: unknown ||Identical REs AC:  RSP01295
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1194. Group RE: Box 2 /AC: RSP01298//OS: Triticum aestivum /GENE: Amy2/54/RE: Box 2 /TF: unknown
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302