> PLPR0157 ..AC:X05166 Y00107 ..OS:Hordeum vulgare ..GENE:Amy32b ..PROD:alpha-amylase type A ..[ -200:  +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.25   G -  0.20   T -  0.27   C -  0.27

      1  cagcttggat agtgctatct tttcccatgg aatttgtgcc ggcccggatt
     51  gacttgccat catctgttgc accttttctc gtaacagagt ctggtatcca
    101  tgcagtgcct ccaagcaaca ctccacgggg acgtagctcg tgttaaatac
    151  cgctgtggca tcgacttccT ATAAATAcca agcacgtaga actcttgtaa
    201  CCATCAATCA CCAGTCTTGT GAATCATTCA TCCACAGAAC AAGAGTGCAG
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00034   Mean Expected Number 0.000   +strand   -119 :  -81   TAACAGA-- ** bp --CCAAGCAACA
AC RSP00331   Mean Expected Number 0.007   +strand   -107 :  -99   GTATCCATG
AC RSP00509   Mean Expected Number 0.001   +strand    -31 :  -20   TATAAATACCAa
AC RSP00680   Mean Expected Number 0.007   +strand   -119 : -110   TAACAGAGTC
AC RSP00792   Mean Expected Number 0.009   +strand    -90 :  -81   CCAAGCAACA
AC RSP00922   Mean Expected Number 0.000   +strand   -124 : -110   TCTCGTAACAGAGTC
AC RSP01296   Mean Expected Number 0.001   +strand    -32 :  -24   CTATAAATA
AC RSP01301   Mean Expected Number 0.000   +strand    -32 :  -23   CTATAAATAC

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   33. Group RE: GARE-DAE /Group TF: GAMyb /AC: RSP00034//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE-DAE /TF: GAMyb ||Identical REs AC:  RSP00485  RSP00658  RSP00844  RSP00846  RSP00848  RSP00851
  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
  745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
  851. Group RE: GARE /Group TF: HRT /AC: RSP00922//OS: Hordeum vulgare /GENE: Amy2/32/RE: GARE /TF: HRT
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302