> PLPR0158 ..AC:X13580 ..OS:Triticum aestivum ..GENE:Amy2/54..PROD:alpha-amylase 2/54..[ -200:  +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.24   G -  0.22   T -  0.25   C -  0.30

      1  acttggatgg tgccatcttt ttccatggag tttgtgccac cccggattga
     51  cttgaccgtc atcggctgca ccttttttcg taacagagtc tggtatccat
    101  gcagtgcctc caagcaacac actctacggt acgtagctcg cgttaaatac
    151  tgccatgcca tccactgccT ATAAATAcca agcacgcggg acacttgtgg
    201  CCATCAGTCG ATCAGCCAGT CAGCCAATCA TCCATCCATC CGGAGAAGAA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00034   Mean Expected Number 0.000   +strand   -120 :  -82   TAACAGA-- ** bp --CCAAGCAACA
AC RSP00331   Mean Expected Number 0.007   +strand   -108 : -100   GTATCCATG
AC RSP00509   Mean Expected Number 0.000   +strand    -31 :  -20   TATAAATACCAa
AC RSP00514   Mean Expected Number 0.000   +strand   -153 : -139   TGACTTGACCGTCAT
AC RSP00540   Mean Expected Number 0.000   -strand   -118 : -130   TTACGAAAAAaGG
AC RSP00679   Mean Expected Number 0.000   +strand   -152 : -138   GACTTGACCgTCATC
AC RSP00680   Mean Expected Number 0.006   +strand   -120 : -111   TAACAGAGTC
AC RSP00792   Mean Expected Number 0.010   +strand    -91 :  -82   CCAAGCAACA
AC RSP00922   Mean Expected Number 0.000   +strand   -125 : -111   TtTCGTAACAGAGTC
AC RSP01033   Mean Expected Number 0.005   +strand   -130 : -121   CCTTTTTTCG
AC RSP01293   Mean Expected Number 0.000   +strand   -157 : -139   gGATTGACTTGACCGTCAT
AC RSP01294   Mean Expected Number 0.000   +strand   -181 : -170   TTTCCATGGAGT
AC RSP01296   Mean Expected Number 0.001   +strand    -32 :  -24   CTATAAATA
AC RSP01297   Mean Expected Number 0.001   +strand     -2 :   +7   GGCCATCAG
AC RSP01298   Mean Expected Number 0.000   +strand   -157 : -139   GGATTGACTTGACCGTCAT
AC RSP01301   Mean Expected Number 0.008   +strand    -32 :  -23   CTATAAATAC

  Totally      16 motifs of    16 different REs have been found


Description of REs found

   33. Group RE: GARE-DAE /Group TF: GAMyb /AC: RSP00034//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE-DAE /TF: GAMyb ||Identical REs AC:  RSP00485  RSP00658  RSP00844  RSP00846  RSP00848  RSP00851
  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
  516. Group RE: UN B1 /AC: RSP00540//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: UN B1 /TF: unknown
  648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
  745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
  851. Group RE: GARE /Group TF: HRT /AC: RSP00922//OS: Hordeum vulgare /GENE: Amy2/32/RE: GARE /TF: HRT
  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
 1190. Group RE: Box 2 /AC: RSP01293//OS: Avena fatua /GENE: Amy2/D/RE: Box 2 /TF: unknown ||Identical REs AC:  RSP01295
 1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC:  RSP01299  RSP01300
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1193. Group RE: Inr element /AC: RSP01297//OS: Avena fatua /GENE: Amy2/D/RE: Inr element /TF: unknown
 1194. Group RE: Box 2 /AC: RSP01298//OS: Triticum aestivum /GENE: Amy2/54/RE: Box 2 /TF: unknown
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302