> PLPR0159 ..AC:X13576 ..OS:Triticum aestivum ..GENE:Amy2/8..PROD:alpha-amylase 2/8..[ -200:  +51] ..CDS:+95 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.24   G -  0.23   T -  0.25   C -  0.28

      1  ggtgctatct tttcgcatgg aatttgtgcc agcccggatt gacttgaccg
     51  tcatcggctg caccttttct cgtaacggag tctggtatcc atgcagtgcc
    101  tccaagcaac actccacggc tacgtacgta tagctcgcgt taaatacttt
    151  gagcatggca tcgactgccT ATAAATAcga agccgcggta cacttcttag
    201  CCATCAGTCG ATCAGCCAGT CAGCCAATCA CTCAGTCAAC CGGAGAAGAA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00331   Mean Expected Number 0.007   +strand   -116 : -108   GTATCCATG
AC RSP00488   Mean Expected Number 0.006   -strand    -74 :  -83   gTACGTAGCC
AC RSP00514   Mean Expected Number 0.000   +strand   -161 : -147   TGACTTGACCGTCAT
AC RSP00679   Mean Expected Number 0.000   +strand   -160 : -146   GACTTGACCgTCATC
AC RSP00680   Mean Expected Number 0.007   +strand   -128 : -119   TAACgGAGTC
AC RSP00792   Mean Expected Number 0.009   +strand    -99 :  -90   CCAAGCAACA
AC RSP01293   Mean Expected Number 0.000   +strand   -165 : -147   gGATTGACTTGACCGTCAT
AC RSP01296   Mean Expected Number 0.001   +strand    -32 :  -24   CTATAAATA
AC RSP01298   Mean Expected Number 0.000   +strand   -165 : -147   GGATTGACTTGACCGTCAT
AC RSP01301   Mean Expected Number 0.008   +strand    -32 :  -23   CTATAAATAC

  Totally      10 motifs of    10 different REs have been found


Description of REs found

  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown
  490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
  648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
  745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
 1190. Group RE: Box 2 /AC: RSP01293//OS: Avena fatua /GENE: Amy2/D/RE: Box 2 /TF: unknown ||Identical REs AC:  RSP01295
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1194. Group RE: Box 2 /AC: RSP01298//OS: Triticum aestivum /GENE: Amy2/54/RE: Box 2 /TF: unknown
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302