> PLPR0160 ..AC:X13577 ..OS:Triticum aestivum ..GENE:Amy2/53..PROD:alpha-amylase 2/53..[ -200: +51] ..CDS:+83 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.26 C - 0.27
1 aacttggata gtgctatctt ttcccatgga atttgtgcca gcccggattg
51 acttgaccat catctgttgc accttttctc gtaacggagt ctggtatcca
101 tgcagtgcct ccaagcaaca ctccacgggg acgtagctcg tgttaaatac
151 tgccatggca tcgactgccT ATAAATAcca agcacgtcga acacttgtaa
201 CCATCAATCA CCAGTGTAGC CATCATTCAT CCATAAAAGA AGAGTGCAGT
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00221 Mean Expected Number 0.000 +strand -149 : -107 CTTGACCATCATc-- ** bp --TAACgGAGTCTGG
AC RSP00331 Mean Expected Number 0.007 +strand -107 : -99 GTATCCATG
AC RSP00467 Mean Expected Number 0.003 -strand -142 : -151 TGGTCAAGTC
AC RSP00509 Mean Expected Number 0.001 +strand -31 : -20 TATAAATACCAa
AC RSP00514 Mean Expected Number 0.000 +strand -152 : -138 TGACTTGACCaTCAT
AC RSP00679 Mean Expected Number 0.000 +strand -151 : -137 GACTTGACCATCATC
AC RSP00680 Mean Expected Number 0.008 +strand -119 : -110 TAACgGAGTC
AC RSP00792 Mean Expected Number 0.000 +strand -90 : -81 CCAAGCAACA
AC RSP01296 Mean Expected Number 0.002 +strand -32 : -24 CTATAAATA
AC RSP01298 Mean Expected Number 0.000 +strand -156 : -138 GGATTGACTTGACCaTCAT
AC RSP01301 Mean Expected Number 0.000 +strand -32 : -23 CTATAAATAC
Totally 11 motifs of 11 different REs have been found
Description of REs found
214. Group RE: 02S-GARE /AC: RSP00221//OS: Hordeum vulgare /GENE: Amy32b/RE: 02S-GARE /TF: unknown
317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1194. Group RE: Box 2 /AC: RSP01298//OS: Triticum aestivum /GENE: Amy2/54/RE: Box 2 /TF: unknown
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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