> PLPR0160 ..AC:X13577 ..OS:Triticum aestivum ..GENE:Amy2/53..PROD:alpha-amylase 2/53..[ -200:  +51] ..CDS:+83 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.27   G -  0.20   T -  0.26   C -  0.27

      1  aacttggata gtgctatctt ttcccatgga atttgtgcca gcccggattg
     51  acttgaccat catctgttgc accttttctc gtaacggagt ctggtatcca
    101  tgcagtgcct ccaagcaaca ctccacgggg acgtagctcg tgttaaatac
    151  tgccatggca tcgactgccT ATAAATAcca agcacgtcga acacttgtaa
    201  CCATCAATCA CCAGTGTAGC CATCATTCAT CCATAAAAGA AGAGTGCAGT
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00221   Mean Expected Number 0.000   +strand   -149 : -107   CTTGACCATCATc-- ** bp --TAACgGAGTCTGG
AC RSP00331   Mean Expected Number 0.007   +strand   -107 :  -99   GTATCCATG
AC RSP00467   Mean Expected Number 0.003   -strand   -142 : -151   TGGTCAAGTC
AC RSP00509   Mean Expected Number 0.001   +strand    -31 :  -20   TATAAATACCAa
AC RSP00514   Mean Expected Number 0.000   +strand   -152 : -138   TGACTTGACCaTCAT
AC RSP00679   Mean Expected Number 0.000   +strand   -151 : -137   GACTTGACCATCATC
AC RSP00680   Mean Expected Number 0.008   +strand   -119 : -110   TAACgGAGTC
AC RSP00792   Mean Expected Number 0.000   +strand    -90 :  -81   CCAAGCAACA
AC RSP01296   Mean Expected Number 0.002   +strand    -32 :  -24   CTATAAATA
AC RSP01298   Mean Expected Number 0.000   +strand   -156 : -138   GGATTGACTTGACCaTCAT
AC RSP01301   Mean Expected Number 0.000   +strand    -32 :  -23   CTATAAATAC

  Totally      11 motifs of    11 different REs have been found


Description of REs found

  214. Group RE: 02S-GARE /AC: RSP00221//OS: Hordeum vulgare /GENE: Amy32b/RE: 02S-GARE /TF: unknown
  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
  648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
  745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1194. Group RE: Box 2 /AC: RSP01298//OS: Triticum aestivum /GENE: Amy2/54/RE: Box 2 /TF: unknown
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302