> PLPR0161 ..AC:X13579 ..OS:Triticum aestivum ..GENE:Amy2/46..PROD:alpha-amylase 2/46..[ -200:  +51] ..CDS:+107 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.20   G -  0.28   T -  0.22   C -  0.30

      1  gctacccaat cacggccaca tggtttgcgc acccgccggc cggatttggg
     51  gcggatccgg tcggtcttga gctcgcccgg ctgtgggccg tctcgtctgt
    101  ttagcacgag cctttccaca gtgcgcacgc agctcgtgct aaattctgga
    151  gtacatcgag tcccctgccT ATAAATAcca agcacgtggt acgcttgtag
    201  CCATCAACCC GCCAGTCATT CGGGGAAGAA ACAGAGTGCC TTGTGAGATA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00313   Mean Expected Number 0.002   -strand    +45 :  +35   CACAaGGCACT
AC RSP00509   Mean Expected Number 0.000   +strand    -31 :  -20   TATAAATACCAa
AC RSP00695   Mean Expected Number 0.004   +strand    -31 :  -25   TATAAAT
AC RSP01137   Mean Expected Number 0.001   +strand   -124 : -113   CCGgCTGTGGGC
AC RSP01296   Mean Expected Number 0.000   +strand    -32 :  -24   CTATAAATA
AC RSP01301   Mean Expected Number 0.002   +strand    -32 :  -23   CTATAAATAC

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1)
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  661. Group RE: TATA box /AC: RSP00695//OS: Oryza sativa /GENE: Gt1/RE: TATA box /TF: unknown
 1055. Group RE: Region A /AC: RSP01137//OS: Zea mays /GENE: Adh1/RE: Region A /TF: unknown
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302