> PLPR0162 ..AC:X13578 ..OS:Triticum aestivum ..GENE:Amy2/34..PROD:alpha-amylase 2/34..[ -200:  +51] ..CDS:+57 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.24   G -  0.21   T -  0.25   C -  0.30

      1  cgttttccat ggaggctgtg ccagtgccgc ccctacttga cttgaccatc
     51  atcaattact ccctctcttt tccataacag agttcggtac ccctgcattg
    101  cctgcaagca acactccaca gtgcgtagca gctcgtgcta aattctggag
    151  taccatcgag tcccctgccT ATAAATAcca agcacgtagt acccttgtag
    201  CCATCAACCG GCCAGTCATT CGGAGAAGAA GCAGAGTGCC TTTTGAGATA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00034   Mean Expected Number 0.000   +strand   -126 :  -88   TAACAGA-- ** bp --gCAAGCAACA
AC RSP00467   Mean Expected Number 0.003   -strand   -153 : -162   TGGTCAAgTC
AC RSP00509   Mean Expected Number 0.001   +strand    -31 :  -20   TATAAATACCAa
AC RSP00514   Mean Expected Number 0.000   +strand   -163 : -149   TGACTTGACCaTCAT
AC RSP00679   Mean Expected Number 0.000   +strand   -162 : -148   GACTTGACCATCATC
AC RSP00680   Mean Expected Number 0.006   +strand   -126 : -117   TAACAGAGTt
AC RSP00792   Mean Expected Number 0.010   +strand    -97 :  -88   gCAAGCAACA
AC RSP01326   Mean Expected Number 0.010   -strand    +48 :  +42   TCTCAAA
AC RSP01294   Mean Expected Number 0.000   +strand   -197 : -186   TTTCCATGGAGg
AC RSP01296   Mean Expected Number 0.001   +strand    -32 :  -24   CTATAAATA
AC RSP01301   Mean Expected Number 0.008   +strand    -32 :  -23   CTATAAATAC

  Totally      11 motifs of    11 different REs have been found


Description of REs found

   33. Group RE: GARE-DAE /Group TF: GAMyb /AC: RSP00034//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE-DAE /TF: GAMyb ||Identical REs AC:  RSP00485  RSP00658  RSP00844  RSP00846  RSP00848  RSP00851
  445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
  648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
  745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
 1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC:  RSP01326
 1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC:  RSP01299  RSP01300
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302

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