> PLPR0162 ..AC:X13578 ..OS:Triticum aestivum ..GENE:Amy2/34..PROD:alpha-amylase 2/34..[ -200: +51] ..CDS:+57 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.24 G - 0.21 T - 0.25 C - 0.30
1 cgttttccat ggaggctgtg ccagtgccgc ccctacttga cttgaccatc
51 atcaattact ccctctcttt tccataacag agttcggtac ccctgcattg
101 cctgcaagca acactccaca gtgcgtagca gctcgtgcta aattctggag
151 taccatcgag tcccctgccT ATAAATAcca agcacgtagt acccttgtag
201 CCATCAACCG GCCAGTCATT CGGAGAAGAA GCAGAGTGCC TTTTGAGATA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00034 Mean Expected Number 0.000 +strand -126 : -88 TAACAGA-- ** bp --gCAAGCAACA
AC RSP00467 Mean Expected Number 0.003 -strand -153 : -162 TGGTCAAgTC
AC RSP00509 Mean Expected Number 0.001 +strand -31 : -20 TATAAATACCAa
AC RSP00514 Mean Expected Number 0.000 +strand -163 : -149 TGACTTGACCaTCAT
AC RSP00679 Mean Expected Number 0.000 +strand -162 : -148 GACTTGACCATCATC
AC RSP00680 Mean Expected Number 0.006 +strand -126 : -117 TAACAGAGTt
AC RSP00792 Mean Expected Number 0.010 +strand -97 : -88 gCAAGCAACA
AC RSP01326 Mean Expected Number 0.010 -strand +48 : +42 TCTCAAA
AC RSP01294 Mean Expected Number 0.000 +strand -197 : -186 TTTCCATGGAGg
AC RSP01296 Mean Expected Number 0.001 +strand -32 : -24 CTATAAATA
AC RSP01301 Mean Expected Number 0.008 +strand -32 : -23 CTATAAATAC
Totally 11 motifs of 11 different REs have been found
Description of REs found
33. Group RE: GARE-DAE /Group TF: GAMyb /AC: RSP00034//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE-DAE /TF: GAMyb ||Identical REs AC: RSP00485 RSP00658 RSP00844 RSP00846 RSP00848 RSP00851
445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC: RSP01326
1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC: RSP01299 RSP01300
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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