> PLPR0163 ..AC:Z15117 S57369 ..OS:Sauromatum guttatum ..GENE:aox1 ..PROD:salicylic acid-inducible alternative  oxidase ..[ -200:  +51] ..CDS:+82 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.26   G -  0.14   T -  0.33   C -  0.27

      1  gccaccacct gataagacta tttccttttt tatataatca aattttcgga
     51  catgatcaca ttggcaagga aatcatggtc gacttttaaa taacttttac
    101  aagattaatt atttcttccc atgcatgtgt gtacaaaatg tgcgaggtgt
    151  agtatctcgt caccttacTA TAAATCtctc tctctctctc tctctctctg
    201  AACCAGTCGA CGAGGAGCCA GTGCAGTCCC CTCCCCTCCT CTTCCACAAC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00108   Mean Expected Number 0.003   +strand    -81 :  -74   CATGCATG
AC RSP00108   Mean Expected Number 0.003   -strand    -74 :  -81   CATGCATG
AC RSP00621   Mean Expected Number 0.003   +strand    +33 :  +41   CCCCTCCTC
AC RSP00669   Mean Expected Number 0.000   -strand   -161 : -174   TGATtATATAAAAA
AC RSP00681   Mean Expected Number 0.002   -strand    -90 :  -98   TAATTAATC
AC RSP00709   Mean Expected Number 0.005   +strand    -95 :  -87   TAATTATTT
AC RSP00710   Mean Expected Number 0.001   +strand    -95 :  -83   TAATTATTTCTTc
AC RSP00722   Mean Expected Number 0.007   +strand   -190 : -184   GATAAGA
AC RSP00859   Mean Expected Number 0.002   -strand    +23 :  +14   cACTGGCTCC
AC RSP00864   Mean Expected Number 0.005   -strand     -2 :  -10   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand     -4 :  -12   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand     -6 :  -14   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand     -8 :  -16   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand    -10 :  -18   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand    -12 :  -20   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand    -14 :  -22   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand    -16 :  -24   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.005   -strand    -18 :  -26   AGAGAGAGA
AC RSP01091   Mean Expected Number 0.003   +strand   -169 : -159   ATAtAATCAAA
AC RSP01283   Mean Expected Number 0.000   -strand     -3 :  -19   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand     -5 :  -21   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand     -7 :  -23   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand     -9 :  -25   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    -11 :  -27   GAGAGAGAGAGAGAGAt
AC RSP01470   Mean Expected Number 0.009   +strand    -82 :  -73   cCATGCATGT

  Totally      25 motifs of    12 different REs have been found


Description of REs found

  106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC:  RSP01169  RSP01452
  597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown
  640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown
  650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown
  675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown
  676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown
  687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown
  795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)