> PLPR0164 ..AC:U27980 ..OS:Arabidopsis thaliana ..GENE:ACT4 ..PROD:actin-4 ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.29 C - 0.21
1 aaaatcaata acgcttcatc cggagaacca tgacgaccaa aaccttaatt
51 tttgggcatg ttgaactttc acgtatccaa aaataggtga acacatgtcg
101 tcaccctctt agatatagga tttagcaaaa actaatggcc acgatctgtt
151 aagagtcaag cGATAAAAAg caaagctcct ttcgtttttt cagaaatttt
201 GAACCCATTC AAGTCGGGGC GTTGCAGGAT CCGATTTCTC GTTTTGTTCT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00114 Mean Expected Number 0.006 +strand -107 : -98 CaTGTCGTCA
AC RSP01209 Mean Expected Number 0.008 -strand -115 : -124 CTATTTTTGG
AC RSP01274 Mean Expected Number 0.004 +strand -133 : -124 TtCACGTATC
AC RSP01651 Mean Expected Number 0.001 +strand +38 : +46 CTCGTTTTG
Totally 4 motifs of 4 different REs have been found
Description of REs found
112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2
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