> PLPR0164 ..AC:U27980 ..OS:Arabidopsis thaliana ..GENE:ACT4 ..PROD:actin-4 ..[ -200:  +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.18   T -  0.29   C -  0.21

      1  aaaatcaata acgcttcatc cggagaacca tgacgaccaa aaccttaatt
     51  tttgggcatg ttgaactttc acgtatccaa aaataggtga acacatgtcg
    101  tcaccctctt agatatagga tttagcaaaa actaatggcc acgatctgtt
    151  aagagtcaag cGATAAAAAg caaagctcct ttcgtttttt cagaaatttt
    201  GAACCCATTC AAGTCGGGGC GTTGCAGGAT CCGATTTCTC GTTTTGTTCT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00114   Mean Expected Number 0.006   +strand   -107 :  -98   CaTGTCGTCA
AC RSP01209   Mean Expected Number 0.008   -strand   -115 : -124   CTATTTTTGG
AC RSP01274   Mean Expected Number 0.004   +strand   -133 : -124   TtCACGTATC
AC RSP01651   Mean Expected Number 0.001   +strand    +38 :  +46   CTCGTTTTG

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
 1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2

Download This Page
Download Promoter Sequence in FASTA Format