> PLPR0165 ..AC:X13908 S47120 ..OS:Oryza sativa ..GENE:cab1R ..PROD:chlorophyll a/..[ -200:  +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.24   G -  0.14   T -  0.19   C -  0.43

      1  aagaatcttc gagaaactta taaactccgc cgaaaaatct cggacaaacc
     51  cgcggctcac acgcctcctc gcaccaaaac ccacctagaa tatcctctcc
    101  ttggccacgc gcgcacatca gctcCCAATc tcccgcccca ggaggcaatc
    151  ccccctcgct tcccgcgcta tttaaactcc cgcgccatct ccaactccca
    201  ACTCACACTC GCTCGCTCAT CGCCATCTCT CTCAGCTCTC ACAGCTCACT
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00060   Mean Expected Number 0.004   +strand   -142 : -131   ACaCGCCTCCTC
AC RSP00179   Mean Expected Number 0.006   -strand    -25 :  -31   TTTAAAT
AC RSP00629   Mean Expected Number 0.003   +strand   -168 : -161   AAAAATCT
AC RSP00655   Mean Expected Number 0.004   +strand    -32 :  -26   TATTTAA
AC RSP00989   Mean Expected Number 0.008   +strand    -72 :  -64   TCTCCCGCC
AC RSP01024   Mean Expected Number 0.009   +strand   -189 : -183   AGAAACT
AC RSP01025   Mean Expected Number 0.007   +strand   -199 : -193   AGAATCT
AC RSP01030   Mean Expected Number 0.002   +strand   -189 : -182   AGAAACTT
AC RSP01031   Mean Expected Number 0.001   +strand   -199 : -192   AGAATCTT
AC RSP01075   Mean Expected Number 0.004   -strand    -88 :  -97   CgCGCGTGGC

  Totally      10 motifs of    10 different REs have been found


Description of REs found

   59. Group TF: ABF /AC: RSP00060//OS: Zea mays /GENE: rab28/RE: CE3 /TF: ABF
  173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
  605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1
  629. Group RE: TATA box /AC: RSP00655//OS: Oryza sativa /GENE: PAL/RE: TATA box /TF: unknown
  910. Group TF: E2F/DP /AC: RSP00989//OS: Zea mays /GENE: RBR3/RE: E2F/DP IV /TF: E2F/DP
  949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown
  950. Group RE: R2 /AC: RSP01025//OS: Arabidopsis thaliana /GENE: GapB/RE: R2 /TF: unknown
  955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
  956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF
  993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short)