> PLPR0166 ..AC:AB013816 ..OS:Arabidopsis thaliana ..GENE:DREB1B ..PROD:DREB1B ..[ -200: +51] ..CDS:+180 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.24 C - 0.24
1 taaaggttaa cgagtgaaga gtcaaaagtc tctttacaag ggtcaaagga
51 cacacgtcag acagcgagtg gaacatcgtg ggattgcttc gctatgtact
101 atacacgtgt cattcacaga gacaaaaact ccgtgtgctc cccacatatc
151 cgttatctct cctccggcca aTATAAACAc caattctcac tctcactttt
201 TATACTAACT ACACACTTGA AAAAGAATCT ACCTGAAAAG AAAAAAAAGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00110 Mean Expected Number 0.004 +strand -150 : -143 CACACGTC
AC RSP00143 Mean Expected Number 0.004 -strand -143 : -152 GACGtGTGTC
AC RSP00340 Mean Expected Number 0.004 +strand -99 : -90 TaCACGTGTC
AC RSP00524 Mean Expected Number 0.008 -strand -91 : -97 ACACGTG
AC RSP00653 Mean Expected Number 0.001 +strand -48 : -38 TTaTCTCTCCT
AC RSP00887 Mean Expected Number 0.003 +strand +23 : +31 AAGAATCTA
AC RSP01035 Mean Expected Number 0.008 +strand -96 : -90 ACGTGTC
AC RSP01256 Mean Expected Number 0.003 +strand -98 : -91 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -91 : -98 ACACGTGT
AC RSP01258 Mean Expected Number 0.006 -strand -142 : -149 TGACGTGT
AC RSP01575 Mean Expected Number 0.000 +strand -153 : -140 GGACACAcGTCAGA
AC RSP01641 Mean Expected Number 0.010 -strand -74 : -83 TtTTGTCTCT
Totally 12 motifs of 11 different REs have been found
Description of REs found
108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown
139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1
960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1
1404. Group RE: ICEr1 /AC: RSP01575//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr1 /TF: unknown
1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown
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