> PLPR0167 ..AC:X54643 ..OS:Hordeum vulgare ..GENE:Amy1 ..PROD:alpha amylase ..[ -200:  +51] ..CDS:+57 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.29   G -  0.22   T -  0.19   C -  0.31

      1  cctccatctc catcacttgg gcattgaatc gccttttgag ctcaccgtac
     51  cggccgataa caaactccgg ccgacatatc cactggccca aaggagcatt
    101  caagccgagc acacgagaaa gtgatttgca agttgcacac cggcaGCAAT
    151  tccggcatgc tgcagcacac TATAAATAcc tggccagaca cacaagctga
    201  ATGCATCAGT TCTCCATCGT ACTCTTCGAG AGCACAGCAA GAGAGAGCTG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00035   Mean Expected Number 0.007   -strand   -163 : -169   CAAAAGG
AC RSP00181   Mean Expected Number 0.000   +strand   -149 : -129   GGCCGATAACAAACTCCGGCC
AC RSP00509   Mean Expected Number 0.001   +strand    -30 :  -19   TATAAATACCtG
AC RSP01224   Mean Expected Number 0.000   +strand   -144 : -131   ATAACAAACTCCGG
AC RSP01296   Mean Expected Number 0.001   +strand    -31 :  -23   CTATAAATA
AC RSP01301   Mean Expected Number 0.009   +strand    -31 :  -22   CTATAAATAC

  Totally       6 motifs of     6 different REs have been found


Description of REs found

   34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family
  175. Group RE: GARE /AC: RSP00181//OS: Hordeum vulgare /GENE: Amy1/6-4/RE: GARE /TF: unknown
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
 1130. Group RE: GARE /AC: RSP01224//OS: Oryza sativa /GENE: Amy7 (Amy1A)/RE: GARE /TF: unknown
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302