> PLPR0169 ..AC:M63223 ..OS:Triticum aestivum ..GENE:germin 9f-2.8 ..PROD:germin ..[ -200: +51] ..CDS:+106 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.26 C - 0.31
1 catttccata gcagccggca gtggccttga ctctgactgc cacgcaagta
51 atatatcttt aataaactcg ctgccttgct tcgtgtgtcc atttgcaaat
101 gcatgcagtg acgacatgca catgcatagc ttaattagct ccatgcatcc
151 actgcttcca ttaatccccT ATATAAAgga ctccatatgc ctcaccattc
201 ACTCATCCAC CACAGCTTAG CAGCAGCAAC AACCAGTGCC ATAGACACTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00114 Mean Expected Number 0.005 -strand -83 : -92 CaTGTCGTCA
AC RSP00247 Mean Expected Number 0.005 +strand -162 : -153 GCCACGcAAG
AC RSP00349 Mean Expected Number 0.001 +strand -61 : -53 TCCATGCAT
AC RSP00595 Mean Expected Number 0.001 +strand -72 : -64 GCTTAATTA
AC RSP01013 Mean Expected Number 0.007 -strand -106 : -115 CAAATGGAcA
AC RSP01076 Mean Expected Number 0.006 -strand -153 : -162 CtTGCGTGGC
Totally 6 motifs of 6 different REs have been found
Description of REs found
112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738
334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays, Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1)
571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown
938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short)
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