> PLPR0169 ..AC:M63223 ..OS:Triticum aestivum ..GENE:germin 9f-2.8 ..PROD:germin ..[ -200:  +51] ..CDS:+106 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.27   G -  0.16   T -  0.26   C -  0.31

      1  catttccata gcagccggca gtggccttga ctctgactgc cacgcaagta
     51  atatatcttt aataaactcg ctgccttgct tcgtgtgtcc atttgcaaat
    101  gcatgcagtg acgacatgca catgcatagc ttaattagct ccatgcatcc
    151  actgcttcca ttaatccccT ATATAAAgga ctccatatgc ctcaccattc
    201  ACTCATCCAC CACAGCTTAG CAGCAGCAAC AACCAGTGCC ATAGACACTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00114   Mean Expected Number 0.005   -strand    -83 :  -92   CaTGTCGTCA
AC RSP00247   Mean Expected Number 0.005   +strand   -162 : -153   GCCACGcAAG
AC RSP00349   Mean Expected Number 0.001   +strand    -61 :  -53   TCCATGCAT
AC RSP00595   Mean Expected Number 0.001   +strand    -72 :  -64   GCTTAATTA
AC RSP01013   Mean Expected Number 0.007   -strand   -106 : -115   CAAATGGAcA
AC RSP01076   Mean Expected Number 0.006   -strand   -153 : -162   CtTGCGTGGC

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
  240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC:  RSP00738
  334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays,  Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1)
  571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown
  938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
  994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short)

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