> PLPR0170 ..AC:J05208 ..OS:Glycine max ..GENE:SbPRP2 ..PROD:cell wall protein SbPRP2..[ -200: +51] ..CDS:+30 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.25 C - 0.24
1 gtcaatgttc ccgttaaatt tccaactttg caactacaag aagacagcat
51 tcacctacac agcaattgaa aatccacacc gaagattgac ctttgtacaa
101 cggtgctaga aaccgcgtca ctagtaataa ctATTGGatt gagacatgca
151 cttaacagta aggcccccaa ctaaTATAAA AAccagttat tgggtgtgtt
201 ACTCATCAGC AACTACAACG TGAGAAACAT GGCTTCCTTA AGCTCCTTAG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00442 Mean Expected Number 0.007 +strand -178 : -169 cAACTTTGCA
AC RSP00509 Mean Expected Number 0.002 +strand -26 : -15 TATAAAaACCAG
AC RSP01079 Mean Expected Number 0.001 +strand -152 : -141 ATTCACCTACaC
AC RSP01602 Mean Expected Number 0.003 -strand -57 : -64 TCTCAATC
Totally 4 motifs of 4 different REs have been found
Description of REs found
422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
997. Group TF: DcMYB1 /AC: RSP01079//OS: Daucus carota /GENE: DcPAL1/RE: box-L1 /TF: DcMYB1
1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
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