> PLPR0171 ..AC:D21160 ..OS:Oryza sativa ..GENE:Osg6B ..PROD:anther specific protein..[ -200: +51] ..CDS:+76 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.24 C - 0.25
1 ccggaaaaaa aaaacaggaa ggcataacag caaaacaaaa acagtggaaa
51 ttaagcattg ctaattacaa acttttctga tcattcacac cattttcatg
101 tttgatcccg ctcaaacttc acttcaacag cttagacact cttagctagc
151 aaaagtccta atcacaggca tTATAAATGg cacaggcaat tagcctcatc
201 TACACACACT GCCATCACTC CAATTAACCA AAGCTAATTA AGCTAGCTCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00543 Mean Expected Number 0.008 +strand -35 : -29 AGGCATT
AC RSP00595 Mean Expected Number 0.002 -strand +43 : +35 GCTTAATTA
AC RSP00749 Mean Expected Number 0.006 -strand -128 : -139 AgTTTGTAATTA
AC RSP00917 Mean Expected Number 0.007 -strand -73 : -82 GTTGAAGTGA
Totally 4 motifs of 4 different REs have been found
Description of REs found
519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown
571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown
711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1
848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2
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