> PLPR0172 ..AC:Z68152 ..OS:Gossypium hirsutum ..GENE:Chi2;1 ..PROD:chitinase..[ -200:  +51] ..CDS:+45 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.12   T -  0.32   C -  0.25

      1  cttaatccaa tttgttgact gtaagataag atcggactaa gcctaaaaaa
     51  agaaccttcc ttcttccatt attacaaatc acgacaattc atccttgtgt
    101  tttagTCAAT tacatcatac gcttccactt tgttttgtat gatgcttctc
    151  tctcctaacc cactcTATAA AAAtcaccct gatccttcct atgaaatcca
    201  CGTCCCACAC GTAAAACACT TTAGTTGATA GCTAGCAGCA AAAATGAAGT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00057   Mean Expected Number 0.009   +strand     -4 :   +6   TCCACGTCcC
AC RSP00227   Mean Expected Number 0.001   +strand   -178 : -170   AAGATAAGA
AC RSP00653   Mean Expected Number 0.007   +strand    -55 :  -45   TTCTCTCTCCT
AC RSP00865   Mean Expected Number 0.002   -strand    -46 :  -54   GGAGAGAGA
AC RSP01138   Mean Expected Number 0.000   -strand     +4 :   -8   GACGTGGATTTC
AC RSP01210   Mean Expected Number 0.010   -strand   -149 : -158   CTTTTTTTAG
AC RSP01261   Mean Expected Number 0.005   -strand    +14 :   +7   TTACGTGT
AC RSP01712   Mean Expected Number 0.001   +strand   -158 : -149   CTAAAAAAAG

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF
  220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
 1056. Group RE: Region C /AC: RSP01138//OS: Zea mays /GENE: Adh1/RE: Region C /TF: unknown
 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs
 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1
 1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN