> PLPR0173 ..AC:AB004819 ..OS:Oryza sativa ..GENE:rep1 ..PROD:cysteine endopeptidase..[ -200: +51] ..CDS:+120 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.24 C - 0.40
1 ttgaatctgg ccagaatctt cgacgccatt ggcaactcac gtagcccgcc
51 gctaacgtag cagccgtcca tcccaactcc ctagctgaat ctgacaccat
101 cgcacgcatc tttctgttac ccccatttaa atccgtctcg tttcccgccg
151 caaatcccag cTATAAATAc gtctccctcc cttctccttc ctcctcatcg
201 CCCTCACCCT CCAATTCCAA TCCCTCCCAA GAACTAGCTG ATCACGACGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00179 Mean Expected Number 0.009 +strand -75 : -69 TTTAAAT
AC RSP00179 Mean Expected Number 0.008 -strand -70 : -76 TTTAAAT
AC RSP00354 Mean Expected Number 0.001 +strand -148 : -141 TAACGTAG
AC RSP00355 Mean Expected Number 0.003 -strand -82 : -89 TAACAGAA
AC RSP00695 Mean Expected Number 0.008 +strand -39 : -33 TATAAAT
AC RSP01004 Mean Expected Number 0.007 -strand -69 : -78 AtTTAAATGG
AC RSP01025 Mean Expected Number 0.008 +strand -188 : -182 AGAATCT
AC RSP01031 Mean Expected Number 0.002 +strand -188 : -181 AGAATCTT
AC RSP01296 Mean Expected Number 0.001 +strand -40 : -32 CTATAAATA
AC RSP01301 Mean Expected Number 0.009 +strand -40 : -31 CTATAAATAC
Totally 10 motifs of 9 different REs have been found
Description of REs found
173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown
340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown
661. Group RE: TATA box /AC: RSP00695//OS: Oryza sativa /GENE: Gt1/RE: TATA box /TF: unknown
929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO
950. Group RE: R2 /AC: RSP01025//OS: Arabidopsis thaliana /GENE: GapB/RE: R2 /TF: unknown
956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
Download This Page
Download Promoter Sequence in FASTA Format