> PLPR0176 ..AC:X67662 ..OS:Madagascar periwinkle ..GENE:tdc ..PROD:tryptophan decarboxylase..[ -200:  +51] ..CDS:+122 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.34   G -  0.12   T -  0.35   C -  0.20

      1  agaacagttt atttaatctt acattatttt cataatgtgt cgagtaaaaa
     51  aaaaaaaaaa agtaaaaaca aaaatagagg gagtattatt ttgatatttt
    101  taaacgtgga attagttctc agtctcttac gactgctgtg ttgctgctgc
    151  ttttctgtaa aaccagTATA TATAtacaaa caaatctcaa caaagtttcc
    201  ACACAGCACA GCAACTTCCT CATTTCTCTC TCTCTCTCTC TCTCTCTCTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00020   Mean Expected Number 0.000   +strand   -162 : -151   GTCGAGTAAAAA
AC RSP00021   Mean Expected Number 0.004   +strand   -144 : -133   AAAAAGTAAAAA
AC RSP00441   Mean Expected Number 0.007   +strand    -12 :   -3   AACAAAGTtT
AC RSP00864   Mean Expected Number 0.002   -strand    +51 :  +43   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +49 :  +41   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +47 :  +39   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +45 :  +37   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +43 :  +35   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +41 :  +33   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +39 :  +31   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +37 :  +29   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +35 :  +27   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   -strand    +33 :  +25   AGAGAGAGA
AC RSP01128   Mean Expected Number 0.009   +strand    -81 :  -64   CAGT-- ** bp --TGCT
AC RSP01283   Mean Expected Number 0.000   -strand    +50 :  +34   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    +48 :  +32   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    +46 :  +30   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    +44 :  +28   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    +42 :  +26   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    +40 :  +24   GAGAGAGAGAGAGAGAA
AC RSP01734   Mean Expected Number 0.003   -strand    -91 :  -97   TCCACGT

  Totally      21 motifs of     7 different REs have been found


Description of REs found

   19. Group TF: GT-1 /AC: RSP00020//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box6 /TF: GT-1
   20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1
  421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3