> PLPR0178 ..AC:X61937.1 ..OS:Brassica napus ..GENE:oleosin BN-III..PROD:chloroplastic ribosomal protein S1..[ -200: +51] ..CDS:+75 ..TSS:201 (+1) # Alternative TSS(s): +4 +52 +55 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.31 C - 0.26
1 tgtgtgagtg ttaacgttcg gtttcaaatg ccaacgccat tggaacaaaa
51 caaacgtgtc ctcaagtaaa cccctgtcgt ttacacctca atggctgcat
101 ggtgaagcca ttaacacgtg gcgtagaatg catgacgacg ccATTGAcac
151 ctgactctct ttccttctct tcatatatct ctaatcaatt caacactcat
201 TGTCATAGCT ATTCGGAAAA TATATACACA TCCTTTTCTC TTCGATCTCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00002 Mean Expected Number 0.000 +strand -87 : -79 ACACGTGGC
AC RSP00175 Mean Expected Number 0.001 +strand -86 : -79 CACGTGGC
AC RSP00204 Mean Expected Number 0.002 +strand -88 : -79 aACACGTGGC
AC RSP00233 Mean Expected Number 0.003 -strand -74 : -83 TCTACGcCAC
AC RSP00524 Mean Expected Number 0.010 +strand -87 : -81 ACACGTG
AC RSP00819 Mean Expected Number 0.002 -strand -79 : -88 GCCACGTgTT
AC RSP00891 Mean Expected Number 0.003 +strand +17 : +25 AAAATATAT
AC RSP01034 Mean Expected Number 0.006 +strand -85 : -79 ACGTGGC
AC RSP01255 Mean Expected Number 0.002 +strand -87 : -80 ACACGTGG
Totally 9 motifs of 9 different REs have been found
Description of REs found
2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF
823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
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