> PLPR0178 ..AC:X61937.1 ..OS:Brassica napus ..GENE:oleosin BN-III..PROD:chloroplastic ribosomal protein S1..[ -200:  +51] ..CDS:+75 ..TSS:201 (+1) # Alternative TSS(s):   +4  +52  +55 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.27   G -  0.16   T -  0.31   C -  0.26

      1  tgtgtgagtg ttaacgttcg gtttcaaatg ccaacgccat tggaacaaaa
     51  caaacgtgtc ctcaagtaaa cccctgtcgt ttacacctca atggctgcat
    101  ggtgaagcca ttaacacgtg gcgtagaatg catgacgacg ccATTGAcac
    151  ctgactctct ttccttctct tcatatatct ctaatcaatt caacactcat
    201  TGTCATAGCT ATTCGGAAAA TATATACACA TCCTTTTCTC TTCGATCTCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00002   Mean Expected Number 0.000   +strand    -87 :  -79   ACACGTGGC
AC RSP00175   Mean Expected Number 0.001   +strand    -86 :  -79   CACGTGGC
AC RSP00204   Mean Expected Number 0.002   +strand    -88 :  -79   aACACGTGGC
AC RSP00233   Mean Expected Number 0.003   -strand    -74 :  -83   TCTACGcCAC
AC RSP00524   Mean Expected Number 0.010   +strand    -87 :  -81   ACACGTG
AC RSP00819   Mean Expected Number 0.002   -strand    -79 :  -88   GCCACGTgTT
AC RSP00891   Mean Expected Number 0.003   +strand    +17 :  +25   AAAATATAT
AC RSP01034   Mean Expected Number 0.006   +strand    -85 :  -79   ACGTGGC
AC RSP01255   Mean Expected Number 0.002   +strand    -87 :  -80   ACACGTGG

  Totally       9 motifs of     9 different REs have been found


Description of REs found

    2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF
  823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1

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