> PLPR0179 ..AC:AF013115 ..OS:Arabidopsis thaliana ..GENE:CAO ..PROD:CAO, chloroplast targeted regulatory gactor ..[ -200:  +51] ..CDS:+16 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.34   G -  0.15   T -  0.34   C -  0.17

      1  aacctgttga ttttctaaaa gtagaagaaa ataagtgcag tccataaaat
     51  aaaatcctat aaaaatgtta aaactagatt ctttttaaaa aaactaaaat
    101  ttgctgcaga catctaaaat tttcgaaaat gATTGGgtgg ctaagatttc
    151  ttatccacta gaaaatccag tgagtcccgt taactctctt ctcttctcta
    201  GTCTTGTCTT CTATTATGCA AAAGGTCTTC TTGGCCATGG ATACTTGTGC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00331   Mean Expected Number 0.006   -strand    +44 :  +36   GTATCCATG
AC RSP00741   Mean Expected Number 0.003   +strand   -139 : -128   AAAAtGTTAAAA
AC RSP00887   Mean Expected Number 0.003   -strand   -118 : -126   AAGAATCTA
AC RSP00961   Mean Expected Number 0.004   +strand    +17 :  +24   TGCAAAAG
AC RSP01058   Mean Expected Number 0.006   -strand    -41 :  -48   TAGTGGAT

  Totally       5 motifs of     5 different REs have been found


Description of REs found

  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1
  819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1
  886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
  978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a