> PLPR0181 ..AC:AF198177 ..OS:Lycopersicon esculentum ..GENE:Asc ..PROD:ASC1 ..[ -200: +51] ..CDS:+20 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.27 C - 0.21
1 tcgatccgcc aaatatgatt tttctaaaaa aagaattatt caatcgaaac
51 ttccgggaca tatctccaaa cagaatcatg gcttttgcta caaaatcatc
101 acctcgctct ttacaaccta ACAATtcgaa aacttgttct gcaattcatt
151 tgaaactaca acaatagaag aagaaaaaaa agttcaattc aacagatttt
201 TGAAAAAAAA AGTCAACAGA TGAAAAACCT GGATCACATC GCTGCTTCGG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00055 Mean Expected Number 0.007 +strand -169 : -158 AGAATTATTcAA
AC RSP00629 Mean Expected Number 0.007 -strand +1 : -7 AAAAATCT
AC RSP00735 Mean Expected Number 0.004 -strand -178 : -185 AAAAATCA
AC RSP01712 Mean Expected Number 0.003 +strand -177 : -168 CTAAAAAAAG
Totally 4 motifs of 4 different REs have been found
Description of REs found
54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645
605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1
698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1
1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN
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