> PLPR0182 ..AC:AF217547 ..OS:Arabidopsis thaliana ..GENE:calmodulin-binding protein ..PROD:calmodulin-binding protein ..[ -200:  +51] ..CDS:+165 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.36   G -  0.16   T -  0.31   C -  0.18

      1  aacaaaagga gagtcgcata tatccacatt gcagcctaat aagtgtttga
     51  taaaatgtct ggaaaagaaa aaaacactca acatcttctt tcaaaagcat
    101  cattacttac actgctcatt cactcgtagA TTGCaactaa aaatatattt
    151  gggcttgggc tctatcagtc aaaagaaatg ggtttgggtt tgtttaatta
    201  ATTTCTCAAA CCCAATTAAA CCCTAAGAGA AATTGAAGAT TTTTCATTTC
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00279   Mean Expected Number 0.003   -strand    +26 :  +18   TTAGGGTTT
AC RSP00369   Mean Expected Number 0.003   +strand    +18 :  +26   AAACCCTAA
AC RSP01303   Mean Expected Number 0.005   +strand    +17 :  +26   TAAACCCTAA
AC RSP01304   Mean Expected Number 0.003   +strand    +17 :  +26   TaAACCCTAA

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC:  RSP00448
  354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format