> PLPR0185 ..AC:AJ131214 ..OS:Arabidopsis thaliana ..GENE:srp30 ..PROD:SF2/ASF-like splicing modulator Srp30 ..[ -200: +51] ..CDS:+123 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.31 C - 0.22
1 aatattccgg tttgaatgat aagaaaaaac acattcgatc cggttagaac
51 aatatattaa caggcccatt aaaacatatg ggccgatctt gatcaactgg
101 gctattcatc gttgatacat gcggccgcac aggattaaaa tccagttccg
151 tttTATAAAA Ggatactagt ttccaaacga acggtggttg tctcctttcc
201 AGAACAATCT AACGCTTTCT CGAACATCTT CTTCTTCTTC TTTCTCGAAA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00628 Mean Expected Number 0.010 +strand +3 : +10 AACAATCT
AC RSP01755 Mean Expected Number 0.001 -strand -11 : -18 CAACCACC
Totally 2 motifs of 2 different REs have been found
Description of REs found
604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1
1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1
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