> PLPR0187 ..AC:AJ003142 ..OS:Lycopersicon esculentum ..GENE:vsf-1 ..PROD:transcription factor VSF-1 ..[ -200: +51] ..CDS:+237 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.20 G - 0.12 T - 0.41 C - 0.27
1 caaccgtaat caccgccatt ttcagcggga aattcacctt ctctccaaaa
51 tcccattttt tcccctataa ccccaccccc cacaacttca ctttcatcaa
101 tgtttgcacg tttgtctctc atcatattca actgtagctc ctttaaattt
151 tgacTATAAA CTttcaggta ctccgttttc ttccttgctc tgcttttctc
201 AATCTTGTTT TTCATTCATC TGTTGTTTGG GGTTTTGTGT TTGTTTGAAT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00015 Mean Expected Number 0.000 -strand -169 : -176 TTTCCCGC
AC RSP00127 Mean Expected Number 0.002 +strand -177 : -172 AGCGGG
AC RSP00792 Mean Expected Number 0.006 -strand +30 : +21 CCAAaCAACA
AC RSP01071 Mean Expected Number 0.009 -strand -87 : -96 CAAACGTgCA
Totally 4 motifs of 4 different REs have been found
Description of REs found
14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298
125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown
745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153
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